Overview

Most of the time you'll spend in Project view. It provides all tools for raster image and plots visualisation, supports bi-directional gating and give access to cell segmentation and single-cell data analysis.

Project workspace

Layout management

histoCAT Web provides quite flexible layout mechanism, where each panel can be easily resized, moved, hidden or docked into groups of panels. Moreover, users can save multiple layout presets and switch between them on the fly. Default layout is always present and cannot be deleted. If you ever delete a panel and cannot find it anymore, you just need to switch to Default layout, where all panels are present at the same time, and use it as a starting point to construct new layout according to your needs.

Here is how Default layout looks like:

Default project layout

To manage layouts please use controls at the top-right part of the screen:

Layout controls

Layout dropbox menu shows all available layouts. By clicking any element in the menu, you can load that layout. Save layout button opens a dialog where one can name the layout and save it for further use. Reset layouts button deletes all saved layouts and switch back to Default layout.

Info

You can use Reset layouts button in case you removed some panels by accident, because Default layout displays all available panels in the project workspace.

Available panels

Project workspace layout has the following panels:

Slides
Datasets
Gates
Pipelines
Image
Tiles
Segmentation
Channels
Region
Histogram
Presets
Settings
Scatterplot
PCA
tSNE
UMAP
Clusters
Pipeline