List all available datasets

Source: R/listDatasets.R

Summary information for all available datasets in the imcdatasets package.

listDatasets()

Value

A DataFrame where each row corresponds to a dataset, containing the fields:

  • FunctionCall, the R function call required to construct the dataset.

  • Species, species of origin.

  • Tissue, the tissue that was imaged.

  • NumberOfCells, the total number of cells in the dataset.

  • NumberOfImages, the total number of images in the dataset.

  • NumberOfChannels, the number of channels per image.

  • Reference, a Markdown-formatted citation to scripts/ref.bib in the imcdatasets installation directory.

Details

Each dataset contains single-cell data, multichannel images and cell segmentation masks.

Examples

listDatasets()
#> DataFrame with 5 rows and 7 columns
#>             FunctionCall     Species                Tissue NumberOfCells
#>              <character> <character>           <character>     <integer>
#> 1 Damond_2019_Pancreas()       Human              Pancreas        252059
#> 2 HochSchulz_2022_Mela..       Human   Metastatic melanoma        325881
#> 3 JacksonFischer_2020_..       Human Primary breast tumour        285851
#> 4 Zanotelli_2020_Spher..       Human   Cell line spheroids        229047
#> 5 IMMUcan_2022_CancerE..       Human         Primary tumor         46825
#>   NumberOfImages NumberOfChannels              Reference
#>        <integer>        <integer>            <character>
#> 1            100               38  @Damond-2019-Pancreas
#> 2             50               41 @HochSchulz-2022-Mel..
#> 3            100               42 @JacksonFischer-2020..
#> 4            517               51 @Zanotelli-2020-Sphe..
#> 5             14               40                   None