Index

A

Acquisition (class in readimc.data) (class in readimc.data.acquisition) AcquisitionBase (class in readimc.data) (class in readimc.data.acquisition)

acquisitions (readimc.data.Panorama attribute) (readimc.data.panorama.Panorama attribute) (readimc.data.Slide attribute) (readimc.data.slide.Slide attribute)

C

channel_labels (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.acquisition.AcquisitionBase property) (readimc.data.AcquisitionBase property) (readimc.txt_file.TXTFile property) (readimc.TXTFile property) channel_masses (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.acquisition.AcquisitionBase property) (readimc.data.AcquisitionBase property) (readimc.txt_file.TXTFile property) (readimc.TXTFile property) channel_metals (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.acquisition.AcquisitionBase property) (readimc.data.AcquisitionBase property) (readimc.txt_file.TXTFile property) (readimc.TXTFile property)

channel_names (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.acquisition.AcquisitionBase property) (readimc.data.AcquisitionBase property) (readimc.txt_file.TXTFile property) (readimc.TXTFile property) close() (readimc.mcd_file.MCDFile method) (readimc.MCDFile method) (readimc.txt_file.TXTFile method) (readimc.TXTFile method)

D

description (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.Panorama property) (readimc.data.panorama.Panorama property) (readimc.data.Slide property) (readimc.data.slide.Slide property)

H

height_px (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) height_um (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.Panorama property) (readimc.data.panorama.Panorama property) (readimc.data.Slide property) (readimc.data.slide.Slide property)

I

id (readimc.data.Acquisition attribute) (readimc.data.acquisition.Acquisition attribute) (readimc.data.Panorama attribute) (readimc.data.panorama.Panorama attribute) (readimc.data.Slide attribute) (readimc.data.slide.Slide attribute)

IMCFile (class in readimc) (class in readimc.imc_file)

M

m (readimc.mcd_parser.MCDParser attribute) (readimc.MCDParser attribute) MCDFile (class in readimc) (class in readimc.mcd_file) MCDParser (class in readimc) (class in readimc.mcd_parser) MCDParserError, [1] metadata (readimc.data.Acquisition attribute) (readimc.data.acquisition.Acquisition attribute) (readimc.data.Panorama attribute) (readimc.data.panorama.Panorama attribute) (readimc.data.Slide attribute) (readimc.data.slide.Slide attribute) (readimc.mcd_file.MCDFile property) (readimc.mcd_parser.MCDParser property) (readimc.MCDFile property) (readimc.MCDParser property)

metadata_elem (readimc.mcd_parser.MCDParser property) (readimc.MCDParser property) metadata_xmlns (readimc.mcd_parser.MCDParser property) (readimc.MCDParser property) module readimc readimc.data readimc.data.acquisition readimc.data.panorama readimc.data.slide readimc.imc_file readimc.mcd_file readimc.mcd_parser readimc.txt_file

N

num_channels (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.acquisition.AcquisitionBase property) (readimc.data.AcquisitionBase property) (readimc.txt_file.TXTFile property) (readimc.TXTFile property)

O

open() (readimc.mcd_file.MCDFile method) (readimc.MCDFile method) (readimc.txt_file.TXTFile method) (readimc.TXTFile method)

P

Panorama (class in readimc.data) (class in readimc.data.panorama) panorama (readimc.data.Acquisition attribute) (readimc.data.acquisition.Acquisition attribute) panoramas (readimc.data.Slide attribute) (readimc.data.slide.Slide attribute) parse_slides() (readimc.mcd_parser.MCDParser method) (readimc.MCDParser method) path (readimc.imc_file.IMCFile property) (readimc.IMCFile property) (readimc.mcd_file.MCDFile property) (readimc.MCDFile property) (readimc.txt_file.TXTFile property) (readimc.TXTFile property)

pixel_size_x_um (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) pixel_size_y_um (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) points_um (readimc.data.Panorama property) (readimc.data.panorama.Panorama property)

R

read_acquisition() (readimc.imc_file.IMCFile method) (readimc.IMCFile method) (readimc.mcd_file.MCDFile method) (readimc.MCDFile method) (readimc.txt_file.TXTFile method) (readimc.TXTFile method) read_after_ablation_image() (readimc.mcd_file.MCDFile method) (readimc.MCDFile method) read_before_ablation_image() (readimc.mcd_file.MCDFile method) (readimc.MCDFile method) read_panorama() (readimc.mcd_file.MCDFile method) (readimc.MCDFile method) read_slide() (readimc.mcd_file.MCDFile method) (readimc.MCDFile method) readimc module readimc.data module

readimc.data.acquisition module readimc.data.panorama module readimc.data.slide module readimc.imc_file module readimc.mcd_file module readimc.mcd_parser module readimc.txt_file module roi_coords_um (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) roi_points_um (readimc.data.Acquisition attribute) (readimc.data.acquisition.Acquisition attribute)

S

schema_xml (readimc.mcd_file.MCDFile property) (readimc.mcd_parser.MCDParser property) (readimc.MCDFile property) (readimc.MCDParser property) schema_xml_elem (readimc.mcd_parser.MCDParser property) (readimc.MCDParser property) schema_xml_xmlns (readimc.mcd_parser.MCDParser property) (readimc.MCDParser property)

Slide (class in readimc.data) (class in readimc.data.slide) slide (readimc.data.Acquisition attribute) (readimc.data.acquisition.Acquisition attribute) (readimc.data.Panorama attribute) (readimc.data.panorama.Panorama attribute) slides (readimc.mcd_file.MCDFile property) (readimc.MCDFile property)

T

TXTFile (class in readimc) (class in readimc.txt_file)

W

width_px (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) width_um (readimc.data.Acquisition property) (readimc.data.acquisition.Acquisition property) (readimc.data.Panorama property) (readimc.data.panorama.Panorama property) (readimc.data.Slide property) (readimc.data.slide.Slide property)