Function reference • cytomapper

All functions
`CytoImageList-manipulation` `scaleImages` `scaleImages,CytoImageList-method` `normalize` `normalize,CytoImageList-method`	Manipulating CytoImageList objects
`CytoImageList-naming` `channelNames` `channelNames` `channelNames,CytoImageList-method` `channelNames` `names,CytoImageList-method` `names`	Getting and setting the channel and image names
`CytoImageList-subsetting` `getImages` `getChannels` `mergeChannels` `setImages` `setChannels` `getImages,CytoImageList-method` `setImages` `getChannels,CytoImageList-method` `setChannels` `[` `[[`	General subsetting methods for CytoImageList objects
`CytoImageList()`	S4 class for list of images
`compImage()`	Performs channel compensation on multi-channel images
`cytomapperShiny()`	Shiny application to visualise gated cells on images
`loadImages()`	Read images into CytoImageList object
`measureObjects()`	Compute morphological and intensity features from objects on images.
`pancreasImages`	Example CytoImageList object of image files
`pancreasMasks`	Example CytoImageList object of segmentation masks
`pancreasSCE`	Example SingleCellExperiment object
`plotCells()`	Function to visualize cell-level information on segmentation masks
`plotPixels()`	Function to visualize pixel-level information of multi-channel images
`plotting-param`	Further plotting parameters for the cytomapper package

Reference